Stem-loop sequence mtr-MIR2088

Accession

MI0010545 (change log)

Previous IDs

mtr-MIR2088

Description

Medicago truncatula miR2088 stem-loop

Stem-loop

        gua  uc   guagac  c        c                         aaaac   cca    ug 
5' ucucu   uc  gaa      gg ggcuuaac gauguaggccuagauuacauuggac     agu   aacu  a
   |||||   ||  |||      || |||||||| |||||||||||||||||||||||||     |||   ||||   
3' agaga   ag  cuu      uc cugaauug cuacaucuggaucuaauguaaccug     uca   uugg  g
        --a  -u   augaaa  u        u                         guucu   ---    ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 15599389-15599534 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010545

Mature sequence mtr-miR2088-5p

• Accession: MIMAT0010038
• Previous IDs: mtr-miR2088;mtr-miR2088a
• Sequence: 39 - aggccuagauuacauuggac - 58
• Evidence: experimental; Illumina [1,3], Northern [1], 454 [2]

Mature sequence mtr-miR2088-3p

• Accession: MIMAT0010039
• Previous IDs: mtr-miR2088*;mtr-miR2088a*
• Sequence: 93 - uccaauguaaucuaggucua - 112
• Evidence: experimental; Illumina [1,3], Northern [1], 454 [2]

References

1. PMID:19068109 "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families" Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T BMC Genomics. 9:593(2008).
2. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).
3. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).