Stem-loop sequence mtr-MIR1510a

Accession MI0010542
Description Medicago truncatula miR1510a stem-loop
Gene family MIPF0000703; MIR1510
Stem-loop 
     ug   u      u     c     cau      c    cauaaa        a  u    c  c      u    cca 
aaagu  cua ugcaau guugu uuacc   uccucc aucc      ucuauuau ug acuc au aucaua ggau   c
|||||  ||| |||||| ||||| |||||   |||||| ||||      |||||||| || |||| || |||||| ||||    
uuucg  gau acguua caaca aaugg   aggagg uagg      ggauagua gc ugag ua uaguau ucug   u
     --   u      u     a     auu      c    uucuaa        c  -    a  a      -    uuc
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr5: 19405593-19405756 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR1510a
mtr-MIR1510b MtChr5: 19401653-19401888 [+]
mtr-MIR1510a MtChr5: 19405593-19405756 [+]
mtr-MIR2592j MtChr5: 19410202-19410450 [+]

Mature sequence mtr-miR1510a-5p

Accession MIMAT0010032
Previous IDs mtr-miR1510a*
Sequence

20 -  

uugucuuacccauuccuccca

 - 40

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Evidence experimental; Northern [1], Solexa [1]

Mature sequence mtr-miR1510a-3p

Accession MIMAT0010033
Previous IDs mtr-miR1510a
Sequence

128 -  

cggaggauuagguaaaacaac

 - 148

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Evidence experimental; Northern [1], Solexa [1], 454 [2]

References

1
PMID:19068109 "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families" Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T BMC Genomics. 9:593(2008).
2
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).