Stem-loop sequence ppt-MIR2085

AccessionMI0010534 (change log)
DescriptionPhyscomitrella patens miR2085 stem-loop
Gene family MIPF0000809; MIR2084
Stem-loop 
   --------aaa    -    g    u           uuc a               ucc 
5'            aucu gaaa ucgu gaagcgccugc   g uggauugugggcuac   u
              |||| |||| |||| |||||||||||   | |||||||||||||||   c
3'            uaga cuuu agca cuucgcggacg   c accuaacaccugaug   c
   gucaauguuca    a    a    c           uaa a               uug
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (v3.0) Overlapping transcripts
Chr18: 9486736-9486849 [+]
intergenic
Clustered miRNAs
< 10kb from ppt-MIR2085
ppt-MIR2085Chr18: 9486736-9486849 [+]
ppt-MIR2084Chr18: 9486736-9486849 [-]
Database links

Mature sequence ppt-miR2085

Accession MIMAT0010019
Sequence

65 -  

acaauccaacaaugcaggcgc

 - 85

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:19096705 "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development" Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ PLoS Genet. 4:e1000314(2008).