Stem-loop sequence bta-mir-376a

AccessionMI0010457 (change log)
DescriptionBos taurus miR-376a stem-loop
Gene family MIPF0000091; mir-368
Literature search

1 open access papers mention bta-mir-376a
(1 sentences)

Stem-loop
   aauccuuc         u    g  a    c    u      guac   au 
5'         uuugguauu aaaa gu gauu uccu cuauga    auu  u
           ||||||||| |||| || |||| |||| ||||||    |||   
3'         aaacuauga uuuu ca cuaa agga gauacu    uag  u
   ---gucgu         c    g  c    a    -      -aau   ca 
Get sequence
Deep sequencing
3190 reads, 1.54 reads per million, 65 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 67857794-67857892 [+]
sense
ENSBTAT00000053741 ; bta-mir-376a-201; exon 1
Clustered miRNAs
< 10kb from bta-mir-376a
bta-mir-494chr21: 67848049-67848133 [+]
bta-mir-1193chr21: 67848381-67848485 [+]
bta-mir-543chr21: 67850198-67850277 [+]
bta-mir-495chr21: 67851608-67851688 [+]
bta-mir-154cchr21: 67853625-67853699 [+]
bta-mir-376echr21: 67856314-67856395 [+]
bta-mir-376cchr21: 67856685-67856770 [+]
bta-mir-376dchr21: 67857059-67857140 [+]
bta-mir-654chr21: 67857212-67857292 [+]
bta-mir-376bchr21: 67857435-67857527 [+]
bta-mir-376achr21: 67857794-67857892 [+]
bta-mir-1185chr21: 67859743-67859828 [+]
bta-mir-3956chr21: 67860482-67860579 [+]
bta-mir-381chr21: 67861446-67861520 [+]
bta-mir-487bchr21: 67861931-67862014 [+]
bta-mir-539chr21: 67862745-67862822 [+]
bta-mir-544achr21: 67864731-67864821 [+]
bta-mir-655chr21: 67865688-67865784 [+]
Database links

Mature sequence bta-miR-376a

Accession MIMAT0009946
Sequence

61 - 

aucauagaggaaaauccacgu

 - 81

Get sequence
Deep sequencing1293 reads, 65 experiments
Evidence by similarity; MI0003529
Predicted targets

References

1
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).