Stem-loop sequence cte-mir-2001

Accession MI0010234
Previous IDs cap-mir-2001
Description Capitella teleta miR-2001 stem-loop
Gene family MIPF0000711; mir-2001
Stem-loop 
cccguuccuca g   u  c        u      gaag  a 
           c uug ga cguuauaa gggcau    uc u
           | ||| || |||||||| ||||||    || u
           g aac cu gcaauauu cucgua    ag c
---------gc g   u  a        c      -acg  u
Get sequence
Deep sequencing
180 reads, 1 experiments
Genome context
Coordinates (JGI1.0) Overlapping transcripts
scaffold_296: 188007-188083 [+]
intergenic
Clustered miRNAs
< 10kb from cte-mir-2001
cte-mir-2001 scaffold_296: 188007-188083 [+]
cte-mir-252b scaffold_296: 190685-190785 [+]
cte-mir-252a scaffold_296: 191474-191574 [+]

Mature sequence cte-miR-2001

Accession MIMAT0009705
Previous IDs cap-miR-2001
Sequence

14 -  

uugugaccguuauaaugggcaug

 - 36

Get sequence
Deep sequencing 179 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).