Stem-loop sequence spu-mir-125

Accession MI0010203
Description Strongylocentrotus purpuratus miR-125 stem-loop
Gene family MIPF0000017; mir-125
Stem-loop 
aaagaga   -     c      c       cc          a  ugcuuu 
       gac ugccc ccaaau ccugaga  cuaacuugug ug      u
       ||| ||||| |||||| |||||||  |||||||||| ||       
       cug gcggg gguuua ggacucu  gguuggacac ac      a
---cgua   u     u      a       au          -  uaaacu
Get sequence
Deep sequencing
459 reads, 1 experiments
Genome context
Coordinates (Spur2.1) Overlapping transcripts
gb|DS013867|: 13871-13971 [-]
intergenic
Clustered miRNAs
< 10kb from spu-mir-125
spu-let-7 gb|DS013867|: 14835-14935 [-]
spu-mir-125 gb|DS013867|: 13871-13971 [-]
Database links
  • ENTREZGENE: 100314432;Mir125

Mature sequence spu-miR-125-5p

Accession MIMAT0009667
Previous IDs spu-miR-125
Sequence

22 -  

ucccugagacccuaacuuguga

 - 43

Get sequence
Deep sequencing 457 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence spu-miR-125-3p

Accession MIMAT0019161
Previous IDs spu-miR-125*
Sequence

63 -  

acagguugguaucucaggaauu

 - 84

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; 454 [2]

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2
PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).