Stem-loop sequence spu-mir-9

Accession

MI0010189 (change log)

Description

Strongylocentrotus purpuratus miR-9 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   u   ac    -u -u  u   c        u        guauga       c 
5'  cau  ugac  c  gc uuu ucuuuggu aucuagcu      gugaugu a
    |||  ||||  |  || ||| |||||||| ||||||||      |||||||  
3'  gua  acug  g  cg gaa agaaacca uggaucga      uacuacg a
   u   -c    uu uc  u   u        u        ----aa       u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Spur_4.2; GCA_000002235.3): KN915310.1: 590803-590903 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir9
• RNAcentral:URS000075D047_7668
• miRBase Tracker:MI0010189

Mature sequence spu-miR-9-5p

• Accession: MIMAT0009653
• Sequence: 21 - ucuuugguuaucuagcuguaug - 42
• Evidence: experimental; 454 [1]

Mature sequence spu-miR-9-3p

• Accession: MIMAT0009661
• Sequence: 60 - auaaagcuagguuaccaaagau - 81
• Evidence: experimental; 454 [1]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).