Stem-loop sequence cte-mir-71

Accession MI0010061
Previous IDs cap-mir-71
Description Capitella teleta miR-71 stem-loop
Gene family MIPF0000278; mir-71
Stem-loop 
aga a   c    gag       -          g   ug  a  uacacu 
   c aua agag   cuccaug aaagacaugg uag  ag ug      g
   | ||| ||||   ||||||| |||||||||| |||  || ||      u
   g uau ucuc   gagguac uuucuguacu auc  uc ac      c
aua c   -    -aa       c          -   gu  c  uaaucu
Get sequence
Deep sequencing
74 reads, 1 experiments
Genome context
Coordinates (JGI1.0) Overlapping transcripts
scaffold_933: 9913-10013 [+]
intergenic
Clustered miRNAs
< 10kb from cte-mir-71
cte-mir-71 scaffold_933: 9913-10013 [+]
cte-mir-2b scaffold_933: 10029-10129 [+]
cte-mir-2g scaffold_933: 10157-10241 [+]
cte-mir-2c scaffold_933: 10390-10490 [+]
cte-mir-2a scaffold_933: 10534-10634 [+]

Mature sequence cte-miR-71

Accession MIMAT0009517
Previous IDs cap-miR-71
Sequence

22 -  

ugaaagacauggguagugagaug

 - 44

Get sequence
Deep sequencing 71 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).