Stem-loop sequence bfl-mir-216

Accession MI0010039
Description Branchiostoma floridae miR-216 stem-loop
Gene family MIPF0000054; mir-216
Stem-loop 
ugg   u ua         g   a       ucuaac 
   uug g  aucucagcu gca cugugag      u
   ||| |  ||||||||| ||| |||||||       
   aac c  uagggucga cgu ggcacuc      u
uca   u gc         a   -       cuacac
Get sequence
Deep sequencing
7 reads, 1 experiments
Genome context
Coordinates (JGI2.0) Overlapping transcripts
Bf_V2_29: 961712-961786 [-]
intergenic
Clustered miRNAs
< 10kb from bfl-mir-216
bfl-mir-216 Bf_V2_29: 961712-961786 [-]
bfl-mir-217 Bf_V2_29: 960802-960869 [-]

Mature sequence bfl-miR-216-5p

Accession MIMAT0009495
Previous IDs bfl-miR-216
Sequence

9 -  

uaaucucagcuggcaacugugag

 - 31

Get sequence
Deep sequencing 4 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence bfl-miR-216-3p

Accession MIMAT0019150
Previous IDs bfl-miR-216*
Sequence

48 -  

cacggugcaagcugggaucgcu

 - 69

Get sequence
Deep sequencing 3 reads, 1 experiments
Evidence experimental; 454 [2]

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2
PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).