Stem-loop sequence mmu-mir-1982

Accession

MI0009993

Symbol

MGI:Mir1982

Description

Mus musculus miR-1982 stem-loop

Stem-loop

guugguauugcu      gg ccu   -      aguuc   c 
            ugggag  u   ggg gagggg     ugg a
            ||||||  |   ||| ||||||     |||  
            acccuc  g   ccc cucucc     acc c
---------gac      uu uau   a      ----a   c 

Deep sequencing

93 reads, 41 experiments

Genome context

• Coordinates (GRCm38): chr10: 80828797-80828870 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000111596 ; Oaz1-006; intron 2

  OTTMUST00000111591 ; Oaz1-002; exon 2

  OTTMUST00000111595 ; Oaz1-004; intron 4

  OTTMUST00000111594 ; Oaz1-005; intron 5

  OTTMUST00000111593 ; Oaz1-001; intron 5

  OTTMUST00000111592 ; Oaz1-003; intron 5

  ENSMUST00000179341 ; Oaz1-006; intron 2

  ENSMUST00000179894 ; Oaz1-002; exon 2

  ENSMUST00000179620 ; Oaz1-004; intron 4

  ENSMUST00000060987 ; Oaz1-201; intron 5

  ENSMUST00000179172 ; Oaz1-005; intron 5

  ENSMUST00000180036 ; Oaz1-001; intron 5

  ENSMUST00000177850 ; Oaz1-003; intron 5

Database links

• ENTREZGENE: 100316778;Mir1982
• MGI: 3837227;Mir1982

Mature sequence mmu-miR-1982-5p

• Accession: MIMAT0009459
• Previous IDs: mmu-miR-1982*
• Sequence: 12 - uugggaggguccuggggagg - 31
• Deep sequencing: 8 reads, 8 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-1982-5p
  • MICRORNA.ORG:mmu-miR-1982-5p
  • MIRDB:mmu-miR-1982-5p
  • RNA22-MMU:mmu-miR-1982-5p

Mature sequence mmu-miR-1982.1-3p

• Accession: MIMAT0009460
• Previous IDs: mmu-miR-1982.1
• Sequence: 52 - ucucacccuauguucucccacag - 74
• Deep sequencing: 76 reads, 37 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-1982.1-3p
  • MICRORNA.ORG:mmu-miR-1982.1-3p
  • MIRDB:mmu-miR-1982.1-3p
  • RNA22-MMU:mmu-miR-1982.1-3p

Mature sequence mmu-miR-1982.2-3p

• Accession: MIMAT0009461
• Previous IDs: mmu-miR-1982.2
• Sequence: 54 - ucacccuauguucucccacag - 74
• Deep sequencing: 76 reads, 37 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-1982.2-3p
  • MICRORNA.ORG:mmu-miR-1982.2-3p
  • MIRDB:mmu-miR-1982.2-3p
  • RNA22-MMU:mmu-miR-1982.2-3p

References

1. PMID:18923076 "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs" Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R Genes Dev. 22:2773-2785(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).