Stem-loop sequence jcv-mir-J1

Accession MI0009980
Description JC polyomavirus miR-J1 stem-loop
Gene family MIPF0000637; mir-B1
Stem-loop 
    cac      c     a   c    aa     uu  g    u 
ucug   cagagg uucug gac uggg  aagca  gu auug g
||||   |||||| ||||| ||| ||||  |||||  || |||| a
agac   gucuuc gagac cug accu  uucgu  cg ugac u
    uuc      u     -   u    ag     uu  -    u
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Mature sequence jcv-miR-J1-5p

Accession MIMAT0009147
Sequence

15 -  

uucugagaccugggaaaagcau

 - 36

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Evidence experimental; cloned [1], Northern [1]

Mature sequence jcv-miR-J1-3p

Accession MIMAT0009148
Sequence

58 -  

ugcuugauccauguccagaguc

 - 79

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Evidence experimental; cloned [1], Northern [1]

References

1
PMID:18684810 "Evolutionarily conserved function of a viral microRNA" Seo GJ, Fink LH, O'Hara B, Atwood WJ, Sullivan CS J Virol. 82:9823-9828(2008).