Stem-loop sequence mmu-mir-1961

AccessionMI0009958 (change log)
Symbol MGI:Mir1961
DescriptionMus musculus miR-1961 stem-loop
Literature search

1 open access papers mention mmu-mir-1961
(2 sentences)

Stem-loop
   --   ag    aucu       -   -  gc    cc     ccuauac  c        a 
5'   gcu  ccau    gaaguuc aac ac  ccuc  cucuu       gu uauggagg u
     |||  ||||    ||||||| ||| ||  ||||  |||||       || |||||||| u
3'   cga  ggua    uuucaag uug ug  ggag  gagag       ca auaccucc u
   aa   --    ---c       a   a  au    ua     ----uuc  u        a 
Get sequence
Deep sequencing
4037 reads, 1.09 reads per million, 92 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr5: 92788451-92788562 [-]
antisense
OTTMUST00000094929 ; Shroom3-001; intron 2
OTTMUST00000094930 ; Shroom3-002; intron 2
ENSMUST00000113055 ; Shroom3-001; intron 2
ENSMUST00000168878 ; Shroom3-002; intron 2
Database links

Mature sequence mmu-miR-1961

Accession MIMAT0009434
Sequence

82 - 

ugagguaguaguuagaa

 - 98

Get sequence
Deep sequencing3982 reads, 92 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).