Stem-loop sequence mmu-mir-669m-1

Accession MI0009943
Symbol MGI:Mir669m-1
Description Mus musculus miR-669m-1 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
u   --     a   g      gu        c     c    g   au 
 gua  ugugc ugu uguaua  uuugugug augug augu ugu  a
 |||  ||||| ||| ||||||  |||||||| ||||| |||| |||   
 cau  acacg acg acauau  aaacacac uacau uaca aua  u
a   ag     a   a      ac        c     a    g   ag
Get sequence
Deep sequencing
3119 reads, 78 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10512790-10512887 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669m-1
mmu-mir-467a-10 chr2: 10503273-10503355 [+]
mmu-mir-466b-3 chr2: 10503565-10503645 [+]
mmu-mir-669a-12 chr2: 10503791-10503877 [+]
mmu-mir-467e chr2: 10505721-10505807 [+]
mmu-mir-466p chr2: 10506006-10506094 [+]
mmu-mir-467d chr2: 10507630-10507714 [+]
mmu-mir-466a chr2: 10507918-10507990 [+]
mmu-mir-297c chr2: 10509016-10509113 [+]
mmu-mir-669c chr2: 10509296-10509404 [+]
mmu-mir-669a-2 chr2: 10510164-10510260 [+]
mmu-mir-297b chr2: 10511667-10511775 [+]
mmu-mir-466d chr2: 10511967-10512062 [+]
mmu-mir-669m-1 chr2: 10512790-10512887 [+]
mmu-mir-669m-2 chr2: 10513434-10513531 [+]
mmu-mir-466n chr2: 10513741-10513834 [+]
mmu-mir-669o chr2: 10514300-10514395 [+]
mmu-mir-466g chr2: 10514595-10514674 [+]
mmu-mir-466h chr2: 10514891-10514971 [+]
mmu-mir-297a-3 chr2: 10515820-10515921 [+]
mmu-mir-466l chr2: 10516097-10516217 [+]
mmu-mir-297a-4 chr2: 10517067-10517164 [+]
mmu-mir-669i chr2: 10517604-10517730 [+]
mmu-mir-669h chr2: 10518155-10518279 [+]
Database links

Mature sequence mmu-miR-669m-5p

Accession MIMAT0017346
Sequence

25 -  

ugugugcaugugcauguguguau

 - 47

Get sequence
Deep sequencing 4687 reads, 69 experiments
Evidence experimental; Solexa [2]
Predicted targets

Mature sequence mmu-miR-669m-3p

Accession MIMAT0009419
Previous IDs mmu-miR-669m
Sequence

58 -  

auauacauccacacaaacauau

 - 79

Get sequence
Deep sequencing 1294 reads, 42 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).