Stem-loop sequence mmu-mir-1947

Accession MI0009937
Symbol MGI:Mir1947
Description Mus musculus miR-1947 stem-loop
Stem-loop 
--  aca   ug       ac         g      -gc  a 
  ga   agg  guggagg  gagcuagcu agugcu   ag c
  ||   |||  |||||||  ||||||||| ||||||   || a
  cu   ucc  uaccucc  cucgaucga ucacga   uc c
aa  -cg   cg       cu         g      gaa  u
Get sequence
Deep sequencing
3692 reads, 63 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr16: 33105361-33105445 [+]
sense
OTTMUST00000066593 ; Lmln-001; intron 13
ENSMUST00000023497 ; Lmln-001; intron 13
antisense
OTTMUST00000094178 ; RP24-422I18.4-001; intron 1
ENSMUST00000105610 ; Gm17106-001; intron 1
Database links

Mature sequence mmu-miR-1947-5p

Accession MIMAT0009413
Previous IDs mmu-miR-1947
Sequence

15 -  

aggacgagcuagcugagugcug

 - 36

Get sequence
Deep sequencing 1048 reads, 56 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

Mature sequence mmu-miR-1947-3p

Accession MIMAT0017343
Previous IDs mmu-miR-1947*
Sequence

51 -  

gcacugagcuagcucucccucc

 - 72

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [2]
Predicted targets

References

1
PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).