Stem-loop sequence bta-mir-543

AccessionMI0009859 (change log)
DescriptionBos taurus miR-543 stem-loop
Gene family MIPF0000110; mir-329
Literature search

1 open access papers mention bta-mir-543
(1 sentences)

Stem-loop
         u          u  -     ucuu     - uuu 
5' ggugcu aaggagaagu gc ccgug    uuucg c   a
   |||||| |||||||||| || |||||    ||||| |   u
3' cuauga uuuuucuuca cg ggcgc    aaagc g   a
         c          -  u     uuac     a ugu 
Get sequence
Deep sequencing
403 reads, 0 reads per million, 54 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 67850198-67850277 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-543
bta-mir-379chr21: 67840242-67840327 [+]
bta-mir-411achr21: 67841471-67841552 [+]
bta-mir-299chr21: 67841943-67842005 [+]
bta-mir-299-2chr21: 67841948-67841999 [-]
bta-mir-380chr21: 67843176-67843236 [+]
bta-mir-411bchr21: 67843330-67843404 [+]
bta-mir-1197chr21: 67843672-67843768 [+]
bta-mir-323chr21: 67843841-67843926 [+]
bta-mir-758chr21: 67844139-67844226 [+]
bta-mir-329bchr21: 67844880-67844962 [+]
bta-mir-329achr21: 67845190-67845272 [+]
bta-mir-494chr21: 67848049-67848133 [+]
bta-mir-1193chr21: 67848381-67848485 [+]
bta-mir-543chr21: 67850198-67850277 [+]
bta-mir-495chr21: 67851608-67851688 [+]
bta-mir-154cchr21: 67853625-67853699 [+]
bta-mir-376echr21: 67856314-67856395 [+]
bta-mir-376cchr21: 67856685-67856770 [+]
bta-mir-376dchr21: 67857059-67857140 [+]
bta-mir-654chr21: 67857212-67857292 [+]
bta-mir-376bchr21: 67857435-67857527 [+]
bta-mir-376achr21: 67857794-67857892 [+]
bta-mir-1185chr21: 67859743-67859828 [+]
Database links

Mature sequence bta-miR-543

Accession MIMAT0009344
Sequence

49 - 

aaacauucgcggugcacuucuu

 - 70

Get sequence
Deep sequencing354 reads, 53 experiments
Evidence by similarity; MI0003525
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).