Stem-loop sequence bta-mir-543

Accession MI0009859
Description Bos taurus miR-543 stem-loop
Gene family MIPF0000110; mir-329
Stem-loop 
      u          u  -     ucuu     - uuu 
ggugcu aaggagaagu gc ccgug    uuucg c   a
|||||| |||||||||| || |||||    ||||| |   u
cuauga uuuuucuuca cg ggcgc    aaagc g   a
      c          -  u     uuac     a ugu
Get sequence
Genome context
Coordinates (UMD3.1) Overlapping transcripts
chr21: 67571825-67571904 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-543
bta-mir-379 chr21: 67561869-67561954 [+]
bta-mir-411a chr21: 67563098-67563179 [+]
bta-mir-299 chr21: 67563570-67563632 [+]
bta-mir-380 chr21: 67564803-67564863 [+]
bta-mir-411b chr21: 67564957-67565031 [+]
bta-mir-1197 chr21: 67565299-67565395 [+]
bta-mir-323 chr21: 67565468-67565553 [+]
bta-mir-758 chr21: 67565766-67565853 [+]
bta-mir-329b chr21: 67566507-67566589 [+]
bta-mir-329a chr21: 67566817-67566899 [+]
bta-mir-494 chr21: 67569676-67569760 [+]
bta-mir-1193 chr21: 67570008-67570112 [+]
bta-mir-543 chr21: 67571825-67571904 [+]
bta-mir-495 chr21: 67573235-67573315 [+]
bta-mir-154c chr21: 67575252-67575326 [+]
bta-mir-376e chr21: 67577941-67578022 [+]
bta-mir-376c chr21: 67578312-67578397 [+]
bta-mir-376d chr21: 67578686-67578767 [+]
bta-mir-654 chr21: 67578839-67578919 [+]
bta-mir-376b chr21: 67579062-67579154 [+]
bta-mir-376a chr21: 67579421-67579519 [+]
bta-mir-1185 chr21: 67581370-67581455 [+]
Database links
  • ENTREZGENE: 100313063;MIR543

Mature sequence bta-miR-543

Accession MIMAT0009344
Sequence

49 -  

aaacauucgcggugcacuucuu

 - 70

Get sequence
Evidence by similarity; MI0003525

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).