Stem-loop sequence bta-mir-496

Accession MI0009850
Description Bos taurus miR-496 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
------cc    cg      c   u        u     gu         uua 
        gagu  gguacu gaa ggagguug ccaug  guguucauu   u
        ||||  |||||| ||| |||||||| |||||  |||||||||    
        cuua  ucauga cuu ccucuaac gguac  uaugaguag   u
ggguacuu    aa      -   u        c     au         uau
Get sequence
Genome context
Coordinates (UMD3.1) Overlapping transcripts
chr21: 67598869-67598969 [+]
sense
Clustered miRNAs
< 10kb from bta-mir-496
bta-mir-411c chr21: 67589478-67589551 [+]
bta-mir-487a chr21: 67589864-67589943 [+]
bta-mir-3578 chr21: 67592873-67592958 [-]
bta-mir-382 chr21: 67592878-67592953 [+]
bta-mir-134 chr21: 67593257-67593329 [+]
bta-mir-485 chr21: 67593955-67594027 [+]
bta-mir-453 chr21: 67594686-67594765 [+]
bta-mir-154a chr21: 67598039-67598122 [+]
bta-mir-154b chr21: 67598357-67598437 [+]
bta-mir-496 chr21: 67598869-67598969 [+]
bta-mir-377 chr21: 67600490-67600558 [+]
bta-mir-541 chr21: 67602344-67602427 [+]
bta-mir-3957 chr21: 67602730-67602806 [+]
bta-mir-409a chr21: 67603246-67603324 [+]
bta-mir-409b chr21: 67603246-67603324 [-]
bta-mir-412 chr21: 67603388-67603477 [+]
bta-mir-369 chr21: 67603541-67603609 [+]
bta-mir-410 chr21: 67603865-67603945 [+]
bta-mir-656 chr21: 67604689-67604767 [+]
Database links
  • ENTREZGENE: 100313058;MIR496

Mature sequence bta-miR-496

Accession MIMAT0009336
Sequence

55 -  

ugaguauuacauggccaaucuc

 - 76

Get sequence
Evidence experimental; Array [3], qRT-PCR [3]

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).