Stem-loop sequence bta-mir-154a

AccessionMI0009751 (change log)
Previous IDsbta-mir-154
DescriptionBos taurus miR-154 stem-loop
Gene family MIPF0000018; mir-154
Literature search

9 open access papers mention bta-mir-154a
(58 sentences)

Stem-loop
   gc  a   u          uau       gcc    - uuu 
5'   gg acu gaagauaggu   ccgugua   uucg c   a
     || ||| ||||||||||   |||||||   |||| |   c
3'   cc uga uuuuuaucca   ggcacau   aagc g   u
   aa  a   u          cuu       acu    a ugu 
Get sequence
Deep sequencing
88 reads, 0 reads per million, 43 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 67876412-67876495 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-154a
bta-mir-411cchr21: 67867851-67867924 [+]
bta-mir-487achr21: 67868237-67868316 [+]
bta-mir-3578chr21: 67871246-67871331 [-]
bta-mir-382chr21: 67871251-67871326 [+]
bta-mir-134chr21: 67871630-67871702 [+]
bta-mir-668chr21: 67872162-67872257 [+]
bta-mir-485chr21: 67872328-67872400 [+]
bta-mir-453chr21: 67873059-67873138 [+]
bta-mir-154achr21: 67876412-67876495 [+]
bta-mir-154bchr21: 67876730-67876810 [+]
bta-mir-496chr21: 67877242-67877342 [+]
bta-mir-377chr21: 67878863-67878931 [+]
bta-mir-541chr21: 67880717-67880800 [+]
bta-mir-3957chr21: 67881103-67881179 [+]
bta-mir-409achr21: 67881619-67881697 [+]
bta-mir-409bchr21: 67881619-67881697 [-]
bta-mir-412chr21: 67881761-67881850 [+]
bta-mir-369chr21: 67881914-67881982 [+]
bta-mir-410chr21: 67882238-67882318 [+]
bta-mir-323bchr21: 67882753-67882832 [+]
bta-mir-656chr21: 67883062-67883140 [+]
Database links

Mature sequence bta-miR-154a

Accession MIMAT0009240
Previous IDsbta-miR-154
Sequence

15 - 

uagguuauccguguagccuucg

 - 36

Get sequence
Deep sequencing39 reads, 27 experiments
Evidence by similarity; MI0000480
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).