Stem-loop sequence bta-mir-153-1

AccessionMI0009749 (change log)
DescriptionBos taurus miR-153-1 stem-loop
Gene family MIPF0000050; mir-153
Literature search

5 open access papers mention bta-mir-153-1
(7 sentences)

Stem-loop
   c     g       c -             -c       --   au 
5'  ucacg cugccag g ucauuuuugugau  ugcagcu  agu  u
    ||||| ||||||| | |||||||||||||  |||||||  |||   
3'  ggugu gacgguc c agugaaaacacug  acguuga  uca  c
   c     g       a u             au       cc   cu 
Get sequence
Deep sequencing
981 reads, 1.64 reads per million, 61 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr2: 108346811-108346900 [-]
sense
ENSBTAT00000018336 ; PTPRN-201; intron 19
Database links

Mature sequence bta-miR-153

Accession MIMAT0009239
Sequence

54 - 

uugcauagucacaaaagugauc

 - 75

Get sequence
Deep sequencing1934 reads, 61 experiments
Evidence experimental; Array [3], qRT-PCR [3]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).