Stem-loop sequence bta-mir-133a-2

Accession MI0009732
Description Bos taurus miR-133a-2 stem-loop
Gene family MIPF0000029; mir-133
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-133_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

mir-133 is a type of non-coding RNA called a microRNA that was first experimentally characterised in mice. Homologues have since been discovered in several other species including invertebrates such as the fruitfly Drosophila melanogaster. Each species often encodes multiple microRNAs with identical or similar mature sequence. For example, in the human genome there are three known miR-133 genes: miR-133a-1, miR-133a-2 and miR-133b found on chromosomes 18, 20 and 6 respectively. The mature sequence is excised from the 3' arm of the hairpin. miR-133 is expressed in muscle tissue and appears to repress the expression of non-muscle genes.

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Stem-loop
-      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau ucgacca  uu cc ugguuuag     u
a      uau    g       ac  c  c        guaac 
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Genome context
Coordinates (UMD3.1) Overlapping transcripts
chr24: 34844415-34844501 [+]
antisense
ENSBTAT00000025584 ; F1MJV3_BOVIN; intron 11
Clustered miRNAs
< 10kb from bta-mir-133a-2
bta-mir-1-2 chr24: 34841096-34841180 [+]
bta-mir-133a-2 chr24: 34844415-34844501 [+]
Database links

Mature sequence bta-miR-133a

Accession MIMAT0009225
Sequence

52 - 

uuugguccccuucaaccagcug

 - 73

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Evidence experimental; cloned [3]

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).