Stem-loop sequence bta-mir-1-2

AccessionMI0009718 (change log)
DescriptionBos taurus miR-1-2 stem-loop
Gene family MIPF0000038; mir-1
Literature search

29 open access papers mention bta-mir-1-2
(133 sentences)

Stem-loop
   a      c                     ac     ugaaca 
5'  ccuacu agaguacauacuucuuuaugu  ccaua      u
    |||||| |||||||||||||||||||||  |||||       
3'  ggaugg uuuuauguaugaagaaaugua  gguau      a
   c      u                     -a     cguaac 
Get sequence
Deep sequencing
17402 reads, 54.5 reads per million, 66 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr24: 34928847-34928931 [+]
antisense
ENSBTAT00000009822 ; MIB1-201; intron 12
Clustered miRNAs
< 10kb from bta-mir-1-2
bta-mir-1-2chr24: 34928847-34928931 [+]
bta-mir-133a-2chr24: 34932166-34932252 [+]
Database links

Mature sequence bta-miR-1

Accession MIMAT0009214
Sequence

53 - 

uggaauguaaagaaguauguau

 - 74

Get sequence
Deep sequencing34804 reads, 66 experiments
Evidence experimental; cloned [3]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).