Stem-loop sequence dya-mir-5

Accession

MI0009676 (change log)

Description

Drosophila yakuba miR-5 stem-loop

Gene family

MIPF0000309; mir-5

Stem-loop

   --ua       c               cguua 
5'     aaaggaa gaucguugugauaug     u
       ||||||| |||||||||||||||     u
3'     uuuccuu uuagugacacuauac     c
   aaua       -               aaucc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dyak_caf1; GCA_000005975.1): chr2R: 13624062-13624125 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dya-mir-5

• dya-mir-309: chr2R: 13623507-13623575 [+]
• dya-mir-3: chr2R: 13623621-13623689 [+]
• dya-mir-286: chr2R: 13623763-13623860 [+]
• dya-mir-4: chr2R: 13623914-13623994 [+]
• dya-mir-5: chr2R: 13624062-13624125 [+]
• dya-mir-6-1: chr2R: 13624206-13624276 [+]
• dya-mir-6-2: chr2R: 13624342-13624415 [+]
• dya-mir-6-3: chr2R: 13624489-13624568 [+]

Database links

• miRBase Tracker:MI0009676

Mature sequence dya-miR-5

• Accession: MIMAT0009101
• Sequence: 3 - aaaggaacgaucguugugauaug - 25
• Evidence: by similarity; MI0000123

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).