Stem-loop sequence dya-mir-310

AccessionMI0009665 (change log)
DescriptionDrosophila yakuba miR-310 stem-loop
Gene family MIPF0000566; mir-310
Stem-loop
   -    -aa       c   a    uc     g       -    u 
5'  acac   acauuug agg cggg  gugug cagugua uuga u
    ||||   ||||||| ||| ||||  ||||| ||||||| ||||  
3'  ugug   uguaaau ucc gccc  cacac guuauau gauu u
   u    acc       u   c    uu     -       c    c 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dyak_caf1; GCA_000005975.1) Overlapping transcripts
chr2R: 12724935-12725022 [+]
intergenic
Clustered miRNAs
< 10kb from dya-mir-310
dya-mir-992chr2R: 12723683-12723748 [+]
dya-mir-991chr2R: 12723801-12723862 [+]
dya-mir-2498chr2R: 12723909-12723977 [+]
dya-mir-9681chr2R: 12724136-12724190 [+]
dya-mir-311bchr2R: 12724551-12724629 [+]
dya-mir-312chr2R: 12724700-12724766 [+]
dya-mir-311achr2R: 12724827-12724906 [+]
dya-mir-310chr2R: 12724935-12725022 [+]
Database links

Mature sequence dya-miR-310-5p

Accession MIMAT0037350
Sequence

15 - 

aggacgggucguguggcagug

 - 35

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dya-miR-310-3p

Accession MIMAT0009092
Sequence

53 - 

uauugcacacuucccgcccuuu

 - 74

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24985917 "Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines" Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC Genome Res. 24:1236-1250(2014).