Stem-loop sequence dya-mir-311a

AccessionMI0009664 (change log)
DescriptionDrosophila yakuba miR-311a stem-loop
Gene family MIPF0000566; mir-310
Stem-loop
   ua    g     c  a    auc  c u      -   cu 
5'   gaua uuuug gg cggu   ug g caauau uuc  u
     |||| ||||| || ||||   || | |||||| |||  g
3'   cuau aaagu cc gcca   ac c guuaua aag  u
   aa    a     -  g    cuu  a -      u   au 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dyak_caf1; GCA_000005975.1) Overlapping transcripts
chr2R: 12724827-12724906 [+]
intergenic
Clustered miRNAs
< 10kb from dya-mir-311a
dya-mir-992chr2R: 12723683-12723748 [+]
dya-mir-991chr2R: 12723801-12723862 [+]
dya-mir-2498chr2R: 12723909-12723977 [+]
dya-mir-9681chr2R: 12724136-12724190 [+]
dya-mir-311bchr2R: 12724551-12724629 [+]
dya-mir-312chr2R: 12724700-12724766 [+]
dya-mir-311achr2R: 12724827-12724906 [+]
dya-mir-310chr2R: 12724935-12725022 [+]
Database links

Mature sequence dya-miR-311a-5p

Accession MIMAT0037349
Sequence

13 - 

cggacgguaucugcgucaauauu

 - 35

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dya-miR-311a-3p

Accession MIMAT0009091
Sequence

50 - 

uauugcacauucaccggccuga

 - 71

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24985917 "Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines" Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC Genome Res. 24:1236-1250(2014).