Stem-loop sequence dvi-mir-79

AccessionMI0009543 (change log)
DescriptionDrosophila virilis miR-79 stem-loop
Gene family MIPF0000014; mir-9
Stem-loop
   ac      cu    u        cgc       g     uagauu 
5'   gccgca  gccg ugcuuugg   uuuagcu uauga      u
     ||||||  |||| ||||||||   ||||||| |||||       
3'   cggugu  cggu acgaaacc   agaucga auacu      g
   ac      cu    u        auu       a     ucauaa 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (DroVir3) Overlapping transcripts
scaffold_12963: 12863042-12863133 [-]
intergenic
Clustered miRNAs
< 10kb from dvi-mir-79
dvi-mir-9cscaffold_12963: 12863849-12863937 [-]
dvi-mir-306scaffold_12963: 12863214-12863292 [-]
dvi-mir-79scaffold_12963: 12863042-12863133 [-]
dvi-mir-9bscaffold_12963: 12862861-12862949 [-]
Database links

Mature sequence dvi-miR-79-5p

Accession MIMAT0032095
Sequence

17 - 

gcuuuggcgcuuuagcuguauga

 - 39

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dvi-miR-79-3p

Accession MIMAT0008975
Previous IDsdvi-miR-79
Sequence

57 - 

uaaagcuagauuaccaaagcau

 - 78

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).