Stem-loop sequence dvi-mir-12

AccessionMI0009479 (change log)
DescriptionDrosophila virilis miR-12 stem-loop
Gene family MIPF0000181; mir-12
Stem-loop
         ug     u    c          -  gccau 
5' uacggu  aguau acau agguacuggu gu     u
   ||||||  ||||| |||| |||||||||| ||      
3' gugccg  ucaua ugua uucaugacca ca     u
         ca     c    -          a  aucaa 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (DroVir3) Overlapping transcripts
scaffold_12970: 2049328-2049401 [+]
intergenic
Clustered miRNAs
< 10kb from dvi-mir-12
dvi-mir-283scaffold_12970: 2047663-2047757 [+]
dvi-mir-304scaffold_12970: 2048753-2048841 [+]
dvi-mir-12scaffold_12970: 2049328-2049401 [+]
Database links

Mature sequence dvi-miR-12-5p

Accession MIMAT0008911
Previous IDsdvi-miR-12
Sequence

7 - 

ugaguauuacaucagguacuggu

 - 29

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dvi-miR-12-3p

Accession MIMAT0032045
Sequence

49 - 

caguacuuaugucauacuacgc

 - 70

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).