Stem-loop sequence dsi-mir-5

Accession MI0009457
Description Drosophila simulans miR-5 stem-loop
Gene family MIPF0000309; mir-5
Stem-loop 
--ua       c              ga    u 
    aaaggaa gaucguugugauau  guug u
    ||||||| ||||||||||||||  ||||  
    uuuccuu uuagugacacuaua  caac c
uaua       -              --    c
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Genome context
Coordinates (dsim_r1.3_FB2010_02) Overlapping transcripts
2R: 14254101-14254163 [-]
intergenic
Clustered miRNAs
< 10kb from dsi-mir-5
dsi-mir-309 2R: 14254644-14254712 [-]
dsi-mir-3 2R: 14254533-14254601 [-]
dsi-mir-286 2R: 14254362-14254461 [-]
dsi-mir-4 2R: 14254228-14254308 [-]
dsi-mir-5 2R: 14254101-14254163 [-]
dsi-mir-6-1 2R: 14253951-14254021 [-]
dsi-mir-6-2 2R: 14253809-14253882 [-]
dsi-mir-6-3 2R: 14253656-14253735 [-]

Mature sequence dsi-miR-5

Accession MIMAT0008890
Sequence

3 -  

aaaggaacgaucguugugauaug

 - 25

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Evidence by similarity; MI0000123

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).