Stem-loop sequence dsi-mir-311

AccessionMI0009422 (change log)
DescriptionDrosophila simulans miR-311 stem-loop
Gene family MIPF0000566; mir-310
Stem-loop
      a   cau       -a    au   a u      u   uuu 
5' ucu gau   uuuucgg  cggu  aug g caauau uuu   u
   ||| |||   |||||||  ||||  ||| | |||||| |||    
3' aga cua   aaaaguc  gcca  uac c guuaua aag   u
      a   --u       cg    cu   a -      u   cuu 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dsim_caf1; GCA_000259055.1) Overlapping transcripts
chr2R: 15132682-15132767 [-]
intergenic
Clustered miRNAs
< 10kb from dsi-mir-311
dsi-mir-992chr2R: 15134519-15134598 [-]
dsi-mir-991chr2R: 15134391-15134508 [-]
dsi-mir-2498cchr2R: 15134038-15134093 [-]
dsi-mir-2498achr2R: 15133881-15133941 [-]
dsi-mir-2498bchr2R: 15133515-15133573 [-]
dsi-mir-313chr2R: 15132988-15133053 [-]
dsi-mir-312chr2R: 15132849-15132914 [-]
dsi-mir-311chr2R: 15132682-15132767 [-]
dsi-mir-310chr2R: 15132557-15132645 [-]
Database links

Mature sequence dsi-miR-311-5p

Accession MIMAT0037347
Sequence

15 - 

cggacgguauaugagucaauauu

 - 37

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dsi-miR-311-3p

Accession MIMAT0008857
Sequence

54 - 

uauugcacauucaccggccuga

 - 75

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24985917 "Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines" Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC Genome Res. 24:1236-1250(2014).