Stem-loop sequence dse-mir-100

AccessionMI0009358 (change log)
DescriptionDrosophila sechellia miR-100 stem-loop
Gene family MIPF0000033; mir-10
Stem-loop
   -c    a     aa       au   aa      - u uuu 
5'   cauu acaga  cccguaa  ccg  cuugug c g   u
     |||| |||||  |||||||  |||  |||||| | |    
3'   guaa ugucu  ggguauu  ggc  gaacau g c   a
   ac    c     ga       ac   ca      u u uau 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dsec_r1.3_FB2010_02) Overlapping transcripts
scaffold_7: 2092736-2092817 [+]
intergenic
Clustered miRNAs
< 10kb from dse-mir-100
dse-mir-100scaffold_7: 2092736-2092817 [+]
dse-let-7scaffold_7: 2097982-2098059 [+]
dse-mir-125scaffold_7: 2098266-2098375 [+]
Database links

Mature sequence dse-miR-100

Accession MIMAT0008796
Sequence

12 - 

aacccguaaauccgaacuugug

 - 33

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Evidence by similarity; MI0000378

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).