Stem-loop sequence dpe-mir-4

Accession MI0009308
Description Drosophila persimilis miR-4 stem-loop
Gene family MIPF0000305; mir-4
Stem-loop 
 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu c
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aag  acca cag ucg     uacuag c
 gu    c ug   uu    a   a   --aaa      u
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Genome context
Coordinates (dper_r1.3_FB2010_02) Overlapping transcripts
scaffold_2: 8906168-8906248 [+]
intergenic
Clustered miRNAs
< 10kb from dpe-mir-4
dpe-mir-309 scaffold_2: 8905710-8905777 [+]
dpe-mir-3 scaffold_2: 8905839-8905911 [+]
dpe-mir-286 scaffold_2: 8905981-8906076 [+]
dpe-mir-4 scaffold_2: 8906168-8906248 [+]
dpe-mir-5 scaffold_2: 8906361-8906432 [+]
dpe-mir-6-1 scaffold_2: 8906500-8906568 [+]
dpe-mir-6-3 scaffold_2: 8906643-8906725 [+]
dpe-mir-6-2 scaffold_2: 8906789-8906868 [+]

Mature sequence dpe-miR-4

Accession MIMAT0008751
Sequence

49 -  

auaaagcuagacaaccauuga

 - 69

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Evidence by similarity; MI0000122

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).