Stem-loop sequence dmo-mir-5

AccessionMI0009245 (change log)
DescriptionDrosophila mojavensis miR-5 stem-loop
Gene family MIPF0000309; mir-5
Stem-loop
   --    -       c               cgu    c 
5'   gcua aaaggaa gaucguugugauaug   uaau g
     |||| ||||||| |||||||||||||||   |||| a
3'   cgau uuuccuu uuagugacacuauac   auug c
   cg    a       -               ---    c 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dmoj_r1.3_FB2010_02) Overlapping transcripts
scaffold_6496: 20936464-20936535 [-]
intergenic
Clustered miRNAs
< 10kb from dmo-mir-5
dmo-mir-309scaffold_6496: 20937119-20937193 [-]
dmo-mir-3scaffold_6496: 20936993-20937057 [-]
dmo-mir-286scaffold_6496: 20936787-20936889 [-]
dmo-mir-4scaffold_6496: 20936627-20936707 [-]
dmo-mir-5scaffold_6496: 20936464-20936535 [-]
dmo-mir-6-1scaffold_6496: 20936315-20936380 [-]
dmo-mir-6-2scaffold_6496: 20936137-20936217 [-]
dmo-mir-6-3scaffold_6496: 20935959-20936036 [-]
Database links

Mature sequence dmo-miR-5

Accession MIMAT0008691
Sequence

5 - 

aaaggaacgaucguugugauaug

 - 27

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Evidence by similarity; MI0000123

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).