Stem-loop sequence dgr-mir-5-1

AccessionMI0009112 (change log)
DescriptionDrosophila grimshawi miR-5-1 stem-loop
Gene family MIPF0000309; mir-5
Stem-loop
   --    -       c               ---  uuca 
5'   gcua aaaggaa gaucguugugauaug   cg    u
     |||| ||||||| |||||||||||||||   ||     
3'   cgau uuuccuu uuagugacacuauac   gc    u
   cg    a       -               auu  uaaa 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dgri_r1.3_FB2010_02) Overlapping transcripts
scaffold_15112: 2108531-2108603 [-]
intergenic
Clustered miRNAs
< 10kb from dgr-mir-5-1
dgr-mir-309-1scaffold_15112: 2109142-2109217 [-]
dgr-mir-3-1scaffold_15112: 2109014-2109079 [-]
dgr-mir-286-1scaffold_15112: 2108818-2108921 [-]
dgr-mir-4-1scaffold_15112: 2108672-2108752 [-]
dgr-mir-5-1scaffold_15112: 2108531-2108603 [-]
dgr-mir-6-1scaffold_15112: 2108232-2108301 [-]
dgr-mir-6-2scaffold_15112: 2108086-2108164 [-]
dgr-mir-6-3scaffold_15112: 2107923-2107996 [-]
Database links

Mature sequence dgr-miR-5

Accession MIMAT0008570
Sequence

5 - 

aaaggaacgaucguugugauaug

 - 27

Get sequence
Evidence by similarity; MI0000123

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).