Stem-loop sequence der-mir-5

Accession MI0009021
Description Drosophila erecta miR-5 stem-loop
Gene family MIPF0000309; mir-5
Stem-loop 
--ua       c               cguug 
    aaaggaa gaucguugugauaug     u
    ||||||| |||||||||||||||     u
    uuuccuu uuagugacacuauac     c
aaua       -               aaucc
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Genome context
Coordinates (dere_r1.3_FB2010_02) Overlapping transcripts
scaffold_4845: 9748917-9748980 [-]
intergenic
Clustered miRNAs
< 10kb from der-mir-5
der-mir-309 scaffold_4845: 9749455-9749523 [-]
der-mir-3 scaffold_4845: 9749344-9749412 [-]
der-mir-286 scaffold_4845: 9749180-9749277 [-]
der-mir-4 scaffold_4845: 9749045-9749125 [-]
der-mir-5 scaffold_4845: 9748917-9748980 [-]
der-mir-6-1 scaffold_4845: 9748765-9748835 [-]
der-mir-6-2 scaffold_4845: 9748628-9748700 [-]
der-mir-6-3 scaffold_4845: 9748475-9748554 [-]

Mature sequence der-miR-5

Accession MIMAT0008482
Sequence

3 -  

aaaggaacgaucguugugauaug

 - 25

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Evidence by similarity; MI0000123

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).