Stem-loop sequence hsv1-mir-H5

Accession MI0008940
Description Herpes Simplex Virus 1 miR-H5 stem-loop
Gene family MIPF0000966; mir-H5
Stem-loop 
        ucg        cg  c      -    c  ugcc 
gcgcuccc   gggggguu  gg aucucu accu ag    g
||||||||   ||||||||  || |||||| |||| ||     
cgcggggg   ccucccaa  cc uagaga ugga uc    c
        ---        -a  -      c    c  uaac
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Mature sequence hsv1-miR-H5-5p

Accession MIMAT0015280
Sequence

11 -  

ggggggguucgggcaucucuac

 - 32

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Evidence experimental; Solexa [3]

Mature sequence hsv1-miR-H5-3p

Accession MIMAT0008403
Previous IDs hsv1-miR-H5
Sequence

53 -  

gucagagauccaaacccuccgg

 - 74

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Evidence experimental; 454 [1], qRT-PCR [1], Solexa [2-3]

References

1
PMID:18596690 "MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs" Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR Nature. 454:780-783(2008).
2
PMID:19656888 "Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia" Umbach JL, Nagel MA, Cohrs RJ, Gilden DH, Cullen BR J Virol. 83:10677-10683(2009).
3
PMID:20181707 "Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2" Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM J Virol. 84:4659-4672(2010).