Stem-loop sequence tca-mir-283

Accession MI0008927
Description Tribolium castaneum miR-283 stem-loop
Gene family MIPF0000054; mir-216
Stem-loop 
     c     -        c     a       uuga 
guugu uguga aauaucag uggua uucuggg    u
||||| ||||| |||||||| ||||| |||||||     
caaca auacu uuauaguc gcuau aagaccc    g
     a     a        a     -       uaga
Get sequence
Deep sequencing
1998 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 24364871-24364946 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-283
tca-mir-283 chrLG3: 24364871-24364946 [-]
tca-mir-3477 chrLG3: 24360683-24360783 [-]
tca-mir-12 chrLG3: 24360466-24360552 [-]
Database links
  • ENTREZGENE: 100314356;Mir283

Mature sequence tca-miR-283-5p

Accession MIMAT0008387
Previous IDs tca-miR-283
Sequence

11 -  

aaauaucagcugguaauucug

 - 31

Get sequence
Deep sequencing 1984 reads, 2 experiments
Evidence experimental; SOLID [2]

Mature sequence tca-miR-283-3p

Accession MIMAT0019127
Sequence

46 -  

cagaauaucgacugauauuauca

 - 68

Get sequence
Deep sequencing 14 reads, 1 experiments
Evidence experimental; SOLID [2]

References

1
PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).