Stem-loop sequence tca-mir-71

Accession MI0008907
Description Tribolium castaneum miR-71 stem-loop
Gene family MIPF0000278; mir-71
Stem-loop 
   u  ucu         u            ---     a 
guc cu   ugaaagaca ggguagugagau   guuua u
||| ||   ||||||||| ||||||||||||   ||||| u
uag ga   acuuucugu uccaucacucug   uaaau a
   c  ugu         -            uuu     a
Get sequence
Deep sequencing
35486 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 560700-560778 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-71
tca-mir-3842 chrLG3: 559271-559366 [+]
tca-mir-71 chrLG3: 560700-560778 [+]
tca-mir-2c chrLG3: 560814-560896 [+]
tca-mir-13a chrLG3: 560937-561016 [+]
tca-mir-13b chrLG3: 561053-561126 [+]
tca-mir-2a chrLG3: 561179-561266 [+]
tca-mir-2b chrLG3: 561332-561416 [+]
Database links
  • ENTREZGENE: 100314378;Mir71

Mature sequence tca-miR-71-5p

Accession MIMAT0008365
Previous IDs tca-miR-71
Sequence

10 -  

ugaaagacauggguagugagau

 - 31

Get sequence
Deep sequencing 15462 reads, 2 experiments
Evidence experimental; SOLID [2]

Mature sequence tca-miR-71-3p

Accession MIMAT0019109
Sequence

51 -  

ucucacuaccuugucuuucaug

 - 72

Get sequence
Deep sequencing 20022 reads, 2 experiments
Evidence experimental; SOLID [2]

References

1
PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).