Stem-loop sequence tca-mir-2-1

AccessionMI0008894 (change log)
Previous IDstca-mir-2-1
DescriptionTribolium castaneum miR-2-1 stem-loop
Gene family MIPF0000049; mir-2
Literature search

2 open access papers mention tca-mir-2-1
(6 sentences)

Stem-loop
   u   u   c    u          --    a     a   ga u 
5'  uua gug ugug cgcucaucaa  cugg uguga aug  u u
    ||| ||| |||| ||||||||||  |||| ||||| |||  | g
3'  aau uac acau gcgaguaguu  gacc acacu uac  g u
   -   c   a    c          uc    g     a   uc a 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Tcas4.0) Overlapping transcripts
ChLG3: 562865-562952 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-2-1
tca-mir-3842ChLG3: 560957-561052 [+]
tca-mir-71ChLG3: 562386-562464 [+]
tca-mir-2-3ChLG3: 562500-562582 [+]
tca-mir-13aChLG3: 562623-562702 [+]
tca-mir-13bChLG3: 562739-562812 [+]
tca-mir-2-1ChLG3: 562865-562952 [+]
tca-mir-2-2ChLG3: 563018-563102 [+]
Database links

Mature sequence tca-miR-2-1-5p

Accession MIMAT0019094
Sequence

17 - 

cucaucaacuggaugugaaaug

 - 38

Get sequence
Evidence experimental; SOLID [2]
Database links

Mature sequence tca-miR-2-3p

Accession MIMAT0008353
Previous IDstca-miR-2
Sequence

52 - 

uaucacagccagcuuugaugagc

 - 74

Get sequence
Evidence experimental; SOLID [2]

References

1
2
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).