Stem-loop sequence ptr-mir-601

Accession

MI0008807

Description

Pan troglodytes miR-601 stem-loop

Gene family

MIPF0000522; mir-601

Stem-loop

ugcaugaguu     --u  u  --      g    a  -   ca 
          caucu   gg cu  aggauu uugg gg agu  g
          |||||   || ||  |||||| |||| || |||  a
          guggg   cc ga  uccuag gacc cc uca  a
---------g     uuu  u  ag      g    -  a   aa 

Genome context

• Coordinates (PanTro2.1.4): 9: 122458256-122458333 [-]
• Overlapping transcripts:

  sense

  ENSPTRT00000039485 ; intron 16

  ENSPTRT00000044793 ; intron 20

  ENSPTRT00000064817 ; intron 20

  ENSPTRT00000039486 ; intron 20

  ENSPTRT00000064446 ; intron 20

  ENSPTRT00000064446 ; intron 20

Database links

• ENTREZGENE: 100316242;MIR601

Mature sequence ptr-miR-601

• Accession: MIMAT0008270
• Sequence: 16 - uggucuaggauuguuggaggag - 37
• Evidence: by similarity; MI0003614

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).