Stem-loop sequence ptr-mir-520d

Accession MI0008726
Description Pan troglodytes miR-520d stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-               ua           c      guug  u 
 cucaagcugugacuc  caaagggaagc cuuucu    uc a
 |||||||||||||||  ||||||||||| ||||||    || a
 gaguuuggcauuggg  guuucucuucg gaaaga    ag a
a               ug           u      --aa  a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58627842-58627927 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-520d
ptr-mir-524 19: 58617963-58618048 [+]
ptr-mir-517a 19: 58619225-58619310 [+]
ptr-mir-519d 19: 58621051-58621137 [+]
ptr-mir-521-2 19: 58624281-58624366 [+]
ptr-mir-520d 19: 58627842-58627927 [+]
ptr-mir-517b-1 19: 58628806-58628872 [+]
ptr-mir-520g 19: 58629897-58629985 [+]
ptr-mir-516b-2 19: 58633174-58633262 [+]
ptr-mir-526a-2 19: 58634675-58634742 [+]
Database links

Mature sequence ptr-miR-520d

Accession MIMAT0008200
Sequence

53 -  

aaagugcuucucuuuggugggu

 - 74

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Evidence by similarity; MI0003164

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).