Stem-loop sequence ptr-mir-518c

Accession MI0008714
Description Pan troglodytes miR-518c stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
caagaaga     u        u              a   uc    g  u 
        ucuca gcugugac cucuggagggaagc cuu  uguu uc g
        ||||| |||||||| |||||||||||||| |||  |||| || a
        agagu uggcauug gagauuucucuucg gaa  acaa ag a
---cgaaa     u        u              c   --    a  a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58616894-58616993 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-518c
ptr-mir-518f 19: 58608165-58608250 [+]
ptr-mir-520b 19: 58609377-58609436 [+]
ptr-mir-518b 19: 58610892-58610973 [+]
ptr-mir-526a-1 19: 58614407-58614490 [+]
ptr-mir-520c 19: 58615610-58615695 [+]
ptr-mir-518c 19: 58616894-58616993 [+]
ptr-mir-524 19: 58617963-58618048 [+]
ptr-mir-517a 19: 58619225-58619310 [+]
ptr-mir-519d 19: 58621051-58621137 [+]
ptr-mir-521-2 19: 58624281-58624366 [+]
Database links

Mature sequence ptr-miR-518c

Accession MIMAT0008188
Sequence

61 -  

caaagcgcuucucuuuagagugu

 - 83

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Evidence by similarity; MI0003159

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).