Stem-loop sequence ptr-mir-516b-2

Accession MI0008708
Description Pan troglodytes miR-516b-2 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-    -u  u      a        uaa          g g    g 
 cuca  ga gugacc ucuggagg   gaagcacuuu u uuuu u
 ||||  || |||||| ||||||||   |||||||||| | |||| g
 gagu  cu cauugg agacuuuc   cuucgugaaa a aaga a
a    uu  -      g        ---          g a    a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58633174-58633262 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-516b-2
ptr-mir-521-2 19: 58624281-58624366 [+]
ptr-mir-520d 19: 58627842-58627927 [+]
ptr-mir-517b-1 19: 58628806-58628872 [+]
ptr-mir-520g 19: 58629897-58629985 [+]
ptr-mir-516b-2 19: 58633174-58633262 [+]
ptr-mir-526a-2 19: 58634675-58634742 [+]
ptr-mir-518e 19: 58638023-58638109 [+]
ptr-mir-518d 19: 58643046-58643131 [+]
Database links

Mature sequence ptr-miR-516b

Accession MIMAT0008183
Sequence

15 -  

aucuggagguaagaagcacuuu

 - 36

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Evidence by similarity; MI0003172

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).