Stem-loop sequence ptr-mir-380

Accession MI0008653
Description Pan troglodytes miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
-     guu       ga       c   c 
 agaug   gaccaua  acaugcg uau u
 |||||   |||||||  ||||||| |||  
 ucuac   cugguau  uguaugc gug c
u     -ac       aa       u   u
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
14: 100720622-100720681 [+]
sense
antisense
Clustered miRNAs
< 10kb from ptr-mir-380
ptr-mir-379 14: 100717673-100717738 [+]
ptr-mir-411 14: 100718930-100719024 [+]
ptr-mir-299 14: 100719398-100719466 [+]
ptr-mir-380 14: 100720622-100720681 [+]
ptr-mir-1197 14: 100721169-100721255 [+]
ptr-mir-323 14: 100721337-100721421 [+]
ptr-mir-758 14: 100721631-100721717 [+]
ptr-mir-329-1 14: 100722396-100722474 [+]
ptr-mir-329-2 14: 100722713-100722791 [+]
ptr-mir-494 14: 100725256-100725335 [+]
ptr-mir-543 14: 100727611-100727687 [+]
ptr-mir-495 14: 100729375-100729455 [+]
Database links
  • ENTREZGENE: 100316466;MIR380

Mature sequence ptr-miR-380

Accession MIMAT0008132
Sequence

39 -  

uauguaauaugguccacaucuu

 - 60

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Evidence by similarity; MI0000788

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).