Stem-loop sequence ptr-mir-376a-1

Accession

MI0008646

Description

Pan troglodytes miR-376a-1 stem-loop

Gene family

MIPF0000091; mir-368

Stem-loop

-    g  a    c    u      --gua   u 
 aaaa gu gauu uccu cuauga     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuu ca cuaa agga gauacu     gua u
c    g  c    a    -      aauua   u 

Genome context

• Coordinates (PanTro2.1.4): 14: 100737452-100737518 [+]
• Overlapping transcripts:

  sense

  ENSPTRT00000073900 ; exon 1

  ENSPTRT00000073900 ; exon 1

Clustered miRNAs

< 10kb from ptr-mir-376a-1

• ptr-mir-543: 14: 100727611-100727687 [+]
• ptr-mir-495: 14: 100729375-100729455 [+]
• ptr-mir-376c: 14: 100736361-100736425 [+]
• ptr-mir-376a-2: 14: 100736739-100736817 [+]
• ptr-mir-654: 14: 100736889-100736968 [+]
• ptr-mir-376b: 14: 100737106-100737204 [+]
• ptr-mir-376a-1: 14: 100737452-100737518 [+]
• ptr-mir-300: 14: 100738033-100738114 [+]
• ptr-mir-1185-1: 14: 100739642-100739726 [+]
• ptr-mir-1185-2: 14: 100740863-100740947 [+]
• ptr-mir-381: 14: 100742586-100742659 [+]
• ptr-mir-487b: 14: 100743121-100743203 [+]
• ptr-mir-539: 14: 100743978-100744054 [+]
• ptr-mir-889: 14: 100744558-100744635 [+]
• ptr-mir-544: 14: 100745309-100745398 [+]
• ptr-mir-655: 14: 100746189-100746296 [+]

Database links

• ENTREZGENE: 100316331;MIR376A-1

Mature sequence ptr-miR-376a

• Accession: MIMAT0008126
• Sequence: 43 - aucauagaggaaaauccacgu - 63
• Evidence: by similarity; MI0000784

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).