Stem-loop sequence ptr-mir-199b

Accession

MI0008572 (change log)

Description

Pan troglodytes miR-199b stem-loop

Gene family

MIPF0000040; mir-199

Literature search

1 open access papers mention ptr-mir-199b
(1 sentences)

Stem-loop

   cca    -acacc    cu  -     c       u       u    u  ----  a 
5'    gagg      ucca  cc gucua ccagugu uagacua cugu ca    gg c
      ||||      ||||  || ||||| ||||||| ||||||| |||| ||    ||  
3'    cucc      gggu  gg cggau gguuaca gucugau gaca gu    cc u
   --g    cagauu    cg  u     u       c       -    u  uaaa  c 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Pan_tro3.0; GCA_000001515.5)	Overlapping transcripts
chr9: 106385739-106385847 [-]	sense ENSPTRT00000054506 ; ptr-mir-199b-201; exon 1 antisense ENSPTRT00000067307 ; DNM1-201; intron 15 ENSPTRT00000046473 ; DNM1-202; intron 15
KV421084.1: 210110-210218 [-]	sense ENSPTRT00000054506 ; ptr-mir-199b-201; exon 1 antisense ENSPTRT00000067307 ; DNM1-201; intron 15 ENSPTRT00000046473 ; DNM1-202; intron 15

Clustered miRNAs

< 10kb from ptr-mir-199b

• ptr-mir-3154: chr9: 106385956-106386064 [-]
• ptr-mir-199b: chr9: 106385739-106385847 [-]

Database links

• EntrezGene:MIR199B
• miRBase Tracker:MI0008572

Mature sequence ptr-miR-199b

• Accession: MIMAT0008062
• Sequence: 65 - acaguagucugcacauugguua - 86
• Evidence: by similarity; MI0000282
• Predicted targets:
  • TargetScanVert:ptr-miR-199b

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).