Stem-loop sequence MI0008571

Accession

MI0008571

ID

ptr-mir-199a-1

Description

Pan troglodytes miR-199a-1 stem-loop

Stem-loop

g  aac       u        c   u  ---g     
 cc   ccagugu cagacuac ugu ca    gagg 
 ||   ||||||| |||||||| ||| ||    ||| c
 gg   gguuaca gucugaug aca gu    cucu 
-  auu       c        -   u  guaa     

Genome context

• Coordinates (PanTro2.1): 19: 11093658-11093727 [-]
• Overlapping transcripts:

  antisense

  ENSPTRT00000066778 ; intron 12

  ENSPTRT00000067965 ; intron 14

  ENSPTRT00000066726 ; XM_512382.2; intron 15

  ENSPTRT00000065036 ; intron 15

Gene family

MIPF0000040; mir-199

Mature sequence MIMAT0009192

• Accession: MIMAT0009192
• ID: ptr-miR-199a-3p
• Sequence: 47 - acaguagucugcacauugguua - 68
• Evidence: by similarity; MI0000242
• Predicted targets:
  • MICROCOSM:ptr-miR-199a-3p

References

1. "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).