Stem-loop sequence sly-MIR171a

Accession MI0008365
Description Solanum lycopersicum miR171a stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
u    c  u    uu         c       c      ----   -     gua      au 
 gaaa ag aacu  gauauuggc ugguuca ucagac    aac aaaau   aacuau  u
 |||| || ||||  ||||||||| ||||||| ||||||    ||| |||||   ||||||   
 cuuu uc uuga  cuauaaccg gccgagu aguuug    uug uuuug   uuggua  u
a    c  u    cu         u       u      cuuu   c     -ag      ag
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Genome context
Coordinates (SL2.40) Overlapping transcripts
SL2.40ch02: 41330632-41330753 [-]
intergenic

Mature sequence sly-miR171a

Accession MIMAT0007922
Sequence

87 -  

ugauugagccgugccaauauc

 - 107

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Evidence experimental; 454 [1]

References

1
PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).
2
PMID:18602455 "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill" Zhang J, Zeng R, Chen J, Liu X, Liao Q Gene. 423:1-7(2008).