Stem-loop sequence sly-MIR169d

Accession

MI0008364 (change log)

Description

Solanum lycopersicum miR169d stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

16 open access papers mention sly-MIR169d
(45 sentences)

Stem-loop

        -               --    a      uauuua       a               -u   uu     u   guuuaa    a 
5' gaaga gggguuuuauaugaa  guug gaguau      guagcca ggaugacuugccuac  uca  ugaua aua      aaua u
   ||||| |||||||||||||||  |||| ||||||      ||||||| |||||||||||||||  |||  ||||| |||      ||||  
3' cuucu uuccagaauguacuu  uaau cucgua      uaucggu ccuauugaacggaug  ggu  acugu uau      uuau a
        a               uu    g      caguuc       -               cu   uu     u   -aacag    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr7: 2171588-2171763 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sly-MIR169d

• sly-MIR169b: chr7: 2174563-2174767 [+]
• sly-MIR169d: chr7: 2171588-2171763 [-]

Database links

• miRBase Tracker:MI0008364

Mature sequence sly-miR169d

• Accession: MIMAT0007921
• Sequence: 39 - uagccaaggaugacuugccua - 59
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).