Stem-loop sequence sly-MIR169b

Accession MI0008362
Description Solanum lycopersicum miR169b stem-loop
Gene family MIPF0000012; MIR169_1
Stem-loop 
u     -uu    uu      -   -            uugacau         uu      a    a       aaaauagaaguuuuagucaucguuaaaau 
 uuuaa   uggu  caggca guc uccuuggcuacc       gcucuuuuc  uuaugc agau ucuuuuc                             a
 |||||   ||||  |||||| ||| ||||||||||||       |||||||||  |||||| |||| |||||||                              
 aaguu   gcca  guccgu cag aggaaccgaugg       ugagaagag  aguacg ucug agagaag                             u
a     cau    -c      u   u            uuuauuc         -u      a    a       aaaauuuauucugaacauuggggcagagc
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Genome context
Coordinates (SL2.40) Overlapping transcripts
SL2.40ch07: 2174563-2174767 [+]
intergenic
Clustered miRNAs
< 10kb from sly-MIR169b
sly-MIR169d SL2.40ch07: 2171588-2171763 [-]
sly-MIR169b SL2.40ch07: 2174563-2174767 [+]

Mature sequence sly-miR169b

Accession MIMAT0007919
Sequence

171 -  

uagccaaggaugacuugccug

 - 191

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Evidence experimental; 454 [1]

References

1
PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).