Stem-loop sequence hsa-mir-1909

Accession

MI0008330

Symbol

HGNC:MIR1909

Description

Homo sapiens miR-1909 stem-loop

Gene family

MIPF0000973; mir-1909

Stem-loop

cauc    acaa       ug  -   g     c u   g 
    cagg    uggugag  cc ggu ccugc c ggg c
    ||||    |||||||  || ||| ||||| | ||| c
    gucu    gccacuc  gg ccg ggacg g ccc g
cccc    --ac       gu  g   g     c u   u 

Deep sequencing

31 reads, 2 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 1816158-1816237 [-]
• Overlapping transcripts:

  sense

  ENST00000543452 ; REXO1-203; intron 12

  ENST00000543452 ; REXO1-203; intron 12

  ENST00000170168 ; REXO1-201; intron 15

  ENST00000413153 ; REXO1-202; intron 15

  ENST00000170168 ; REXO1-201; intron 15

  ENST00000413153 ; REXO1-202; intron 15

  ENST00000170168 ; REXO1-201; intron 15

Database links

• ENTREZGENE: 100302210;MIR1909
• HGNC: 35393;MIR1909

Mature sequence hsa-miR-1909-5p

• Accession: MIMAT0007882
• Previous IDs: hsa-miR-1909*
• Sequence: 16 - ugagugccggugccugcccug - 36
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1909-5p
  • MICRORNA.ORG:hsa-miR-1909-5p
  • MIRDB:hsa-miR-1909-5p
  • RNA22-HSA:hsa-miR-1909-5p
  • TARGETMINER:hsa-miR-1909-5p

Mature sequence hsa-miR-1909-3p

• Accession: MIMAT0007883
• Previous IDs: hsa-miR-1909
• Sequence: 49 - cgcaggggccgggugcucaccg - 70
• Deep sequencing: 29 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1909-3p
  • MICRORNA.ORG:hsa-miR-1909-3p
  • MIRDB:hsa-miR-1909-3p
  • RNA22-HSA:hsa-miR-1909-3p
  • TARGETMINER:hsa-miR-1909-3p

References

1. PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).