Stem-loop sequence osa-MIR1883b

Accession

MI0008301 (change log)

Description

Oryza sativa miR1883b stem-loop

Gene family

MIPF0000683; MIR1883

Literature search

3 open access papers mention osa-MIR1883b
(3 sentences)

Stem-loop

   --c      a                             c    c a   -       c u      aa 
5'    gguugc gcccgucacagguaucuagucaccuguga gggc g gaa uggaauc g caaagg  c
      |||||| ||||||||||||||||||||||||||||| |||| | ||| ||||||| | ||||||   
3'    ucaacg cgggcaguguccauagaucaguggacacu cccg c cuu aucuuag c guuucc  a
   cau      c                             a    u -   c       a u      ac 

Deep sequencing

246 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 9367993-9368128 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008301

Mature sequence osa-miR1883b

• Accession: MIMAT0007852
• Sequence: 30 - accugugacgggccgagaauggaa - 53
• Deep sequencing: 128 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000051DD07_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).