Stem-loop sequence osa-MIR812i

Accession

MI0008298 (change log)

Description

Oryza sativa miR812i stem-loop

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812i
(17 sentences)

Stem-loop

   --ua a        ca   a               aua         c        a                  aaacuuuuuuaugauuaguauuuuuuuauuagauuguaaaacauga 
5'     g acucccuc  ucc aaaauaagcguagcc   aguuuucgu uucaacuu gaucaucugucuuauuug                                              a
       | ||||||||  ||| |||||||||||||||   ||||||||| |||||||| ||||||||||||||||||                                               
3'     c ugagggag  agg uuuuauucgcgucgg   ucaaaagca agguugaa uuaguaggcagaauaaau                                              u
   gagg a        ua   g               gac         c        a                  aaaaaaaaucuuuuagauuuuauuauauucaguacguauuucauua 

Deep sequencing

2388 reads, 300 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr7: 22152329-22152570 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008298

Mature sequence osa-miR812i

• Accession: MIMAT0007849
• Sequence: 173 - aagacggaugauuaaaguuggaca - 196
• Deep sequencing: 2107 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000034493F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).